Transcript: LINC01252:3

Basic information

LNCipedia transcript ID: LINC01252:3 
HGNC Gene Symbol: LINC01252    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1252
Ensembl Gene ID: ENSG00000247157
Ensembl Transcript ID: ENST00000545239
Location (hg38): chr12:11555700-11557052
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 502 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545239; ENST00000545239.1; RP11-434C1.1-003; OTTHUMT00000400128.1; NONHSAT026951
Alternative gene names: ENSG00000247157; RP11-434C1.1; ENSG00000247157.2; OTTHUMG00000168537.1; ENSG00000247157.6; LINC01252;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.6635 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01252:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ETV6-1:2
3.1 lnc-ETV6-1:2
4.0 LINC01252:3
4.1 LINC01252:3
5.0 LINC01252:3
5.1 LINC01252:3
5.2 LINC01252:3