Transcript: LINC01278:14

Basic information

LNCipedia transcript ID: LINC01278:14 
HGNC Gene Symbol: LINC01278    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1278
Ensembl Gene ID: ENSG00000235437
Ensembl Transcript ID: ENST00000433061
Location (hg38): chrX:63509942-63561049
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 529 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017062; ENST00000433061.1; RP11-357C3.3-001; OTTHUMT00000056936.1; NONHSAT137312
Alternative gene names: XLOC_008174; linc-SPIN4; ENSG00000235437.2; RP11-357C3.3; OTTHUMG00000021699.1; ENSG00000235437.3; ENSG00000235437.7; LINC01278;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -41.703 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01278:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARHGEF9-1:7
3.1 lnc-ARHGEF9-1:7
4.0 LINC01278:14
4.1 LINC01278:14
5.0 LINC01278:14
5.1 LINC01278:14
5.2 LINC01278:14