Transcript: LINC01278:20

Basic information

LNCipedia transcript ID: LINC01278:20 
HGNC Gene Symbol: LINC01278    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1278
Ensembl Gene ID: ENSG00000235437
Ensembl Transcript ID: ENST00000609401
RefSeq ID: NR_015353
Location (hg38): chrX:63426559-63560993
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2886 bp
Exons: 4
Sources: Broad Institute; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00016925; NR_015353; ENST00000609401.1; ENST00000609401.5; NR_015353.1
Alternative gene names: XLOC_008174; linc-SPIN4; ENSG00000235437.3; RP11-357C3.3; ENSG00000235437.7; LINC01278;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 15.6244 non-coding 
CPAT coding probability 20.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01278:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARHGEF9-1:9
3.1 lnc-ARHGEF9-1:9
4.0 LINC01278:20
4.1 LINC01278:20
5.0 LINC01278:20
5.1 LINC01278:20
5.2 LINC01278:20