Transcript: LINC01346:3

Basic information

LNCipedia transcript ID: LINC01346:3 
HGNC Gene Symbol: LINC01346    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1346
Ensembl Gene ID: ENSG00000233304
Ensembl Transcript ID: ENST00000456897
Location (hg38): chr1:3940613-3949351
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456897; ENST00000456897.1; RP13-614K11.1-002; OTTHUMT00000001801.1; NONHSAT000564; ENST00000456897.5
Alternative gene names: ENSG00000233304; RP13-614K11.1; ENSG00000233304.1; OTTHUMG00000000499.2; ENSG00000233304.6; LINC01346;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.9232 non-coding 
CPAT coding probability 4.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01346:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DFFB-2:1
3.1 lnc-DFFB-2:1
4.0 LINC01346:3
4.1 LINC01346:3
5.0 LINC01346:3
5.1 LINC01346:3
5.2 LINC01346:3