Transcript: LINC01346:4

Basic information

LNCipedia transcript ID: LINC01346:4 
HGNC Gene Symbol: LINC01346    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1346
Ensembl Gene ID: ENSG00000233304
Ensembl Transcript ID: ENST00000412674
Location (hg38): chr1:3940617-3955262
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3242 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412674; ENST00000412674.1; RP13-614K11.1-001; OTTHUMT00000001241.1; NONHSAT000565
Alternative gene names: ENSG00000233304; RP13-614K11.1; ENSG00000233304.1; OTTHUMG00000000499.2; ENSG00000233304.6; LINC01346;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.4324 non-coding 
CPAT coding probability 19.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01346:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DFFB-2:2
3.1 lnc-DFFB-2:2
4.0 LINC01346:4
4.1 LINC01346:4
5.0 LINC01346:4
5.1 LINC01346:4
5.2 LINC01346:4