Transcript: LINC01349:5

Basic information

LNCipedia transcript ID: LINC01349:5 
LNCipedia gene ID: LINC01349
Location (hg38): chr1:100627049-100628944
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 374 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000588; ENST00000416343; ENST00000416343.1; RP11-84O12.4-001; OTTHUMT00000097435.1; NONHSAT004798
Alternative gene names: XLOC_000940; linc-DBT-2; ENSG00000230402; RP11-84O12.4; ENSG00000230402.1; OTTHUMG00000040491.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.7828 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01349:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EXTL2-1:2
3.1 lnc-EXTL2-1:2
4.0 LINC01349:5
4.1 LINC01349:5
5.0 LINC01349:5
5.1 LINC01349:5
5.2 LINC01349:5