Transcript: LINC01510:1

Basic information

LNCipedia transcript ID: LINC01510:1 
HGNC Gene Symbol: LINC01510    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1510
Ensembl Gene ID: ENSG00000231210
Ensembl Transcript ID: ENST00000458082
Location (hg38): chr7:116573485-116614820
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 626 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458082; ENST00000458082.1; AC006159.3-003; OTTHUMT00000316598.1; NONHSAT147594
Alternative gene names: ENSG00000231210; AC006159.3; ENSG00000231210.2; OTTHUMG00000064097.4; LINC01510;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -284.5053 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01510:1 no no no no

Available literature

  1. Cen (2018), Long noncoding RNA LINC01510 promotes the growth of colorectal cancer cells by modulating MET expression., Cancer Cell Int.
  2. Malouf (2015), Characterization of long non-coding RNA transcriptome in clear-cell renal cell carcinoma by next-generation deep sequencing., Mol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC106873.4.1-1:1
3.1 lnc-AC106873.4.1-2:1
4.0 LINC01510:1
4.1 LINC01510:1
5.0 LINC01510:1
5.1 LINC01510:1
5.2 LINC01510:1