Transcript: LINC01520:2

Basic information

LNCipedia transcript ID: LINC01520:2 
HGNC Gene Symbol: LINC01520    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1520
Ensembl Gene ID: ENSG00000230962
Ensembl Transcript ID: ENST00000441457
Location (hg38): chr10:85449592-85491996
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1487 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017850; ENST00000441457; ENST00000441457.1; RP11-113E21.1-001; OTTHUMT00000049144.1; NONHSAT015345
Alternative gene names: XLOC_008540; linc-OPN4-3; ENSG00000230962; RP11-113E21.1; ENSG00000230962.1; OTTHUMG00000018647.1; LINC01520;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.6975 non-coding 
CPAT coding probability 8.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01520:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM190B-3:1
3.1 lnc-FAM190B-3:1
4.0 LINC01520:2
4.1 LINC01520:2
5.0 LINC01520:2
5.1 LINC01520:2
5.2 LINC01520:2