Transcript: LINC01541:1

Basic information

LNCipedia transcript ID: LINC01541:1 
LNCipedia gene ID: LINC01541
RefSeq ID: NR_038326
Location (hg38): chr18:71519964-71578956
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2718 bp
Exons: 5
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00026212; NONHSAT059793; NR_038326; NR_038326.1
Alternative gene names: XLOC_012874; linc-RTTN-3; ; LINC01541


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.5064 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01541:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CBLN2-3:1
3.1 lnc-CBLN2-5:2
4.0 LINC01541:1
4.1 LINC01541:1
5.0 LINC01541:1
5.1 LINC01541:1
5.2 LINC01541:1