Transcript: LINC01560:1

Basic information

LNCipedia transcript ID: LINC01560:1 
LNCipedia gene ID: LINC01560
RefSeq ID: NR_126059
Location (hg38): chrX:47482716-47485227
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2512 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126059; NR_126059.1
Alternative gene names: ; LINC01560


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -8.9882 non-coding 
CPAT coding probability 6.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01560:1 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CXorf24-4:1
4.0 LINC01560:1
4.1 LINC01560:1
5.0 LINC01560:1
5.1 LINC01560:1
5.2 LINC01560:1