Transcript: MAPT-AS1:3

Basic information

LNCipedia transcript ID: MAPT-AS1:3 
HGNC Gene Symbol: MAPT-AS1    
HGNC Full Gene Name: MAPT antisense RNA 1
Ensembl Gene ID: ENSG00000264589
Ensembl Transcript ID: ENST00000579599
Location (hg38): chr17:45843874-45895513
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1190 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579599.1; RP11-105N13.2-001; OTTHUMT00000441153.2; NONHSAT054182
Alternative gene names: ENSG00000264589.1; RP11-105N13.2; OTTHUMG00000178246.3; MAPT-AS1; ENSG00000264589.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.6743 non-coding 
CPAT coding probability 38.42% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MAPT-AS1:3 no no no no

Available literature

  1. Coupland (2016), Role of the Long Non-Coding RNA MAPT-AS1 in Regulation of Microtubule Associated Protein Tau (MAPT) Expression in Parkinson's Disease., PLoS ONE
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1267-3:2
4.0 MAPT-AS1:3
4.1 MAPT-AS1:3
5.0 MAPT-AS1:3
5.1 MAPT-AS1:3
5.2 MAPT-AS1:3