Transcript: MAPT-AS1:5

Basic information

LNCipedia transcript ID: MAPT-AS1:5 
LNCipedia gene ID: MAPT-AS1
Location (hg38): chr17:45843869-45844777
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 432 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT054181
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.6743 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAPT-AS1:5 no no no no

Available literature

  1. Coupland (2016), Role of the Long Non-Coding RNA MAPT-AS1 in Regulation of Microtubule Associated Protein Tau (MAPT) Expression in Parkinson's Disease., PLoS ONE
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1267-3:5
4.0 MAPT-AS1:5
4.1 MAPT-AS1:5
5.0 MAPT-AS1:5
5.1 MAPT-AS1:5
5.2 MAPT-AS1:5