Transcript: MCHR2-AS1:12

Basic information

LNCipedia transcript ID: MCHR2-AS1:12 
LNCipedia gene ID: MCHR2-AS1
Location (hg38): chr6:100000940-100076406
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 430 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000451220; ENST00000451220.1; RP11-14I4.3-001; OTTHUMT00000041621.1; NONHSAT114147
Alternative gene names: ENSG00000229315; RP11-14I4.3; ENSG00000229315.1; OTTHUMG00000015271.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.0145 non-coding 
CPAT coding probability 6.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MCHR2-AS1:12 no no no no

Available literature

  1. Delacrétaz (2015), Influence of MCHR2 and MCHR2-AS1 Genetic Polymorphisms on Body Mass Index in Psychiatric Patients and In Population-Based Subjects with Present or Past Atypical Depression., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM13-1:4
3.1 lnc-PRDM13-3:4
4.0 MCHR2-AS1:12
4.1 MCHR2-AS1:12
5.0 MCHR2-AS1:12
5.1 MCHR2-AS1:12
5.2 MCHR2-AS1:12