Transcript: MCHR2-AS1:13

Basic information

LNCipedia transcript ID: MCHR2-AS1:13 
HGNC Gene Symbol: MCHR2-AS1    
HGNC Full Gene Name: MCHR2 antisense RNA 1
Ensembl Gene ID: ENSG00000229315
Ensembl Transcript ID: ENST00000451220
Location (hg38): chr6:100000940-100076406
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 429 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451220.2
Alternative gene names: ENSG00000229315.2; MCHR2-AS1; ENSG00000229315.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.0145 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MCHR2-AS1:13 no no no no

Available literature

  1. Delacrétaz (2015), Influence of MCHR2 and MCHR2-AS1 Genetic Polymorphisms on Body Mass Index in Psychiatric Patients and In Population-Based Subjects with Present or Past Atypical Depression., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRDM13-3:13
4.0 MCHR2-AS1:13
4.1 MCHR2-AS1:13
5.0 MCHR2-AS1:13
5.1 MCHR2-AS1:13
5.2 MCHR2-AS1:13