Transcript: MCHR2-AS1:9

Basic information

LNCipedia transcript ID: MCHR2-AS1:9 
LNCipedia gene ID: MCHR2-AS1
Location (hg38): chr6:99994056-100076411
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 524 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000430122; ENST00000430122.1; RP11-14I4.3-002; OTTHUMT00000041622.1; NONHSAT114145
Alternative gene names: ENSG00000229315; RP11-14I4.3; ENSG00000229315.1; OTTHUMG00000015271.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.0545 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MCHR2-AS1:9 yes no no no

Available literature

  1. Delacrétaz (2015), Influence of MCHR2 and MCHR2-AS1 Genetic Polymorphisms on Body Mass Index in Psychiatric Patients and In Population-Based Subjects with Present or Past Atypical Depression., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM13-1:2
3.1 lnc-PRDM13-3:2
4.0 MCHR2-AS1:9
4.1 MCHR2-AS1:9
5.0 MCHR2-AS1:9
5.1 MCHR2-AS1:9
5.2 MCHR2-AS1:9