Transcript: MIR3976HG:9

Basic information

LNCipedia transcript ID: MIR3976HG:9 
HGNC Gene Symbol: MIR3976HG    
HGNC Full Gene Name: MIR3976 host gene
Ensembl Gene ID: ENSG00000261738
Ensembl Transcript ID: ENST00000566533
RefSeq ID: NR_038839
Location (hg38): chr18:5748819-5795901
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1690 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000566533.1; RP11-945C19.1-001; OTTHUMT00000431521.1; NONHSAT057093; NR_038839; ENST00000566533.5; NR_038839.1
Alternative gene names: ENSG00000261738.2; RP11-945C19.1; OTTHUMG00000176112.3; ENSG00000261738.6; MIR3976HG; LINC01469


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.9746 non-coding 
CPAT coding probability 5.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR3976HG:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP001496.1-8:7
4.0 MIR3976HG:9
4.1 MIR3976HG:9
5.0 MIR3976HG:9
5.1 MIR3976HG:9
5.2 MIR3976HG:9