Transcript: MIR4500HG:2

Basic information

LNCipedia transcript ID: MIR4500HG:2 
HGNC Gene Symbol: MIR4500HG    
HGNC Full Gene Name: MIR4500 host gene
Ensembl Gene ID: ENSG00000228824
Ensembl Transcript ID: ENST00000441617
Location (hg38): chr13:87584858-87671259
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 840 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441617; TCONS_00021678; ENST00000441617.1; MIR4500HG-002; OTTHUMT00000045414.1; NONHSAT034588; ENST00000441617.5
Alternative gene names: ENSG00000228824; XLOC_010683; linc-SLITRK6-6; RP11-342C20.3; ENSG00000228824.1; MIR4500HG; OTTHUMG00000017166.1; ENSG00000228824.2; ENSG00000228824.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.727 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR4500HG:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK6-9:2
3.1 lnc-SLITRK6-9:2
4.0 MIR4500HG:2
4.1 MIR4500HG:2
5.0 MIR4500HG:2
5.1 MIR4500HG:2
5.2 MIR4500HG:2