Transcript: MIR4500HG:4

Basic information

LNCipedia transcript ID: MIR4500HG:4 
LNCipedia gene ID: MIR4500HG
Location (hg38): chr13:87615563-87671106
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 615 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000453832; TCONS_00021679; ENST00000453832.1; MIR4500HG-003; OTTHUMT00000045415.1; NONHSAT034593
Alternative gene names: ENSG00000228824; XLOC_010683; linc-SLITRK6-6; RP11-342C20.3; ENSG00000228824.1; MIR4500HG; OTTHUMG00000017166.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.3114 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR4500HG:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK6-9:3
3.1 lnc-SLITRK6-9:3
4.0 MIR4500HG:4
4.1 MIR4500HG:4
5.0 MIR4500HG:4
5.1 MIR4500HG:4
5.2 MIR4500HG:4