Transcript: MIR4500HG:7

Basic information

LNCipedia transcript ID: MIR4500HG:7 
HGNC Gene Symbol: MIR4500HG    
HGNC Full Gene Name: MIR4500 host gene
Ensembl Gene ID: ENSG00000228824
Ensembl Transcript ID: ENST00000436290
RefSeq ID: NR_033829
Location (hg38): chr13:87443987-87670963
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1675 bp
Exons: 6
Sources: Broad Institute; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00021476; NONHSAT034587; NR_033829; ENST00000436290.2; NR_033829.1
Alternative gene names: XLOC_010683; linc-SLITRK6-6; ENSG00000228824.2; MIR4500HG; ENSG00000228824.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.0986 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR4500HG:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK6-9:5
3.1 lnc-SLITRK6-9:5
4.0 MIR4500HG:7
4.1 MIR4500HG:7
5.0 MIR4500HG:7
5.1 MIR4500HG:7
5.2 MIR4500HG:7