Transcript: NREP-AS1:1

Basic information

LNCipedia transcript ID: NREP-AS1:1 
HGNC Gene Symbol: NREP-AS1    
HGNC Full Gene Name: NREP antisense RNA 1
Ensembl Gene ID: ENSG00000250095
Ensembl Transcript ID: ENST00000507222
RefSeq ID: NR_046678
Location (hg38): chr5:111912508-112017306
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 610 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000507222.1; NREP-AS1-001; OTTHUMT00000370811.1; NONHSAT103206; NR_046678; ENST00000507222.5; NR_046678.1
Alternative gene names: ENSG00000250095.1; NREP-AS1; OTTHUMG00000162860.1; ENSG00000250095.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.7232 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NREP-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CAMK4-2:1
4.0 NREP-AS1:1
4.1 NREP-AS1:1
5.0 NREP-AS1:1
5.1 NREP-AS1:1
5.2 NREP-AS1:1