Transcript: OIP5-AS1:18

Basic information

LNCipedia transcript ID: OIP5-AS1:18 
HGNC Gene Symbol: OIP5-AS1    
HGNC Full Gene Name: OIP5 antisense RNA 1
Ensembl Gene ID: ENSG00000247556
Ensembl Transcript ID: ENST00000557993
Location (hg38): chr15:41284031-41289155
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1482 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557993.5
Alternative gene names: ENSG00000247556.6; OIP5-AS1; cyrano; linc-OIP5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.2894 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
OIP5-AS1:18 no no no no

Available literature

  1. Hu (2017), Knockdown of linc-OIP5 inhibits proliferation and migration of glioma cells through down-regulation of YAP-NOTCH signaling pathway., Gene
  2. Lennox (2016), Cellular localization of long non-coding RNAs affects silencing by RNAi more than by antisense oligonucleotides., Nucleic Acids Res.
  3. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  4. Wu (2015), Association of large intergenic noncoding RNA expression with disease activity and organ damage in systemic lupus erythematosus., Arthritis Res. Ther.
  5. He (2013), ANRIL/CDKN2B-AS shows two-stage clade-specific evolution and becomes conserved after transposon insertions in simians., BMC Evol. Biol.
  6. Kapusta (2013), Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs., PLoS Genet.
  7. Ulitsky (2011), Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 OIP5-AS1:18
4.1 OIP5-AS1:18
5.0 OIP5-AS1:18
5.1 OIP5-AS1:18
5.2 OIP5-AS1:18