Transcript: OIP5-AS1:19

Basic information

LNCipedia transcript ID: OIP5-AS1:19 
LNCipedia gene ID: OIP5-AS1
Location (hg38): chr15:41284032-41309703
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1350 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000501665; ENST00000501665.1; OIP5-AS1-003; OTTHUMT00000419059.1; NONHSAT041930
Alternative gene names: ENSG00000247556; AC012652.1; ENSG00000247556.2; OIP5-AS1; OTTHUMG00000172547.2; cyrano; linc-OIP5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.3569 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
OIP5-AS1:19 no no no no

Available literature

  1. Hu (2017), Knockdown of linc-OIP5 inhibits proliferation and migration of glioma cells through down-regulation of YAP-NOTCH signaling pathway., Gene
  2. Lennox (2016), Cellular localization of long non-coding RNAs affects silencing by RNAi more than by antisense oligonucleotides., Nucleic Acids Res.
  3. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  4. Wu (2015), Association of large intergenic noncoding RNA expression with disease activity and organ damage in systemic lupus erythematosus., Arthritis Res. Ther.
  5. He (2013), ANRIL/CDKN2B-AS shows two-stage clade-specific evolution and becomes conserved after transposon insertions in simians., BMC Evol. Biol.
  6. Kapusta (2013), Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs., PLoS Genet.
  7. Ulitsky (2011), Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC012652.1.1-1:5
3.1 lnc-AC012652.1.1-1:14
4.0 OIP5-AS1:19
4.1 OIP5-AS1:19
5.0 OIP5-AS1:19
5.1 OIP5-AS1:19
5.2 OIP5-AS1:19