Transcript: OLMALINC:23

Basic information

LNCipedia transcript ID: OLMALINC:23 
LNCipedia gene ID: OLMALINC
Location (hg38): chr10:100373590-100383368
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2576 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000235823.1|ENST00000454935.1
Alternative gene names: bA34D15.5; FLJ12974; HI-LNC80


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 24.068 non-coding 
CPAT coding probability 7.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
OLMALINC:23 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science
  2. Liu (2015), Long non-coding RNAs expression profile in HepG2 cells reveals the potential role of long non-coding RNAs in the cholesterol metabolism., Chin. Med. J.
  3. Mills (2015), High expression of long intervening non-coding RNA OLMALINC in the human cortical white matter is associated with regulation of oligodendrocyte maturation., Mol Brain
  4. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.
  5. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 OLMALINC:23
5.0 OLMALINC:23
5.1 OLMALINC:23
5.2 OLMALINC:23