Transcript: OLMALINC:34

Basic information

LNCipedia transcript ID: OLMALINC:34 
LNCipedia gene ID: OLMALINC
Location (hg38): chr10:100412934-100413421
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 488 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000608396.1
Alternative gene names: ENSG00000273030.1; RP11-285F16.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.1013 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
OLMALINC:34 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science
  2. Liu (2015), Long non-coding RNAs expression profile in HepG2 cells reveals the potential role of long non-coding RNAs in the cholesterol metabolism., Chin. Med. J.
  3. Mills (2015), High expression of long intervening non-coding RNA OLMALINC in the human cortical white matter is associated with regulation of oligodendrocyte maturation., Mol Brain
  4. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.
  5. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCD-5:1
4.0 lnc-SCD-5:1
4.1 lnc-SCD-5:1
5.0 lnc-SCD-5:1
5.1 OLMALINC:33
5.2 OLMALINC:34