Transcript: OLMALINC:6

Basic information

LNCipedia transcript ID: OLMALINC:6 
LNCipedia gene ID: OLMALINC
Location (hg38): chr10:100373576-100388353
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 987 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00017677
Alternative gene names: XLOC_008583; linc-WNT8B; bA34D15.5; FLJ12974; HI-LNC80


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 4.1449 non-coding 
CPAT coding probability 9.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
OLMALINC:6 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science
  2. Liu (2015), Long non-coding RNAs expression profile in HepG2 cells reveals the potential role of long non-coding RNAs in the cholesterol metabolism., Chin. Med. J.
  3. Mills (2015), High expression of long intervening non-coding RNA OLMALINC in the human cortical white matter is associated with regulation of oligodendrocyte maturation., Mol Brain
  4. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.
  5. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCD-1:2
3.1 lnc-SCD-1:2
4.0 OLMALINC:6
4.1 OLMALINC:6
5.0 OLMALINC:6
5.1 OLMALINC:6
5.2 OLMALINC:6