Transcript: OPA1-AS1:3

Basic information

LNCipedia transcript ID: OPA1-AS1:3 
LNCipedia gene ID: OPA1-AS1
RefSeq ID: NR_046634
Location (hg38): chr3:193618599-193627332
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 502 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT094014; NR_046634; NR_046634.1
Alternative gene names: ; OPA1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.1417 non-coding 
CPAT coding probability 1.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
OPA1-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP13A4-1:3
4.0 OPA1-AS1:3
4.1 OPA1-AS1:3
5.0 OPA1-AS1:3
5.1 OPA1-AS1:3
5.2 OPA1-AS1:3

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