Transcript: OSTM1-AS1:2

Basic information

LNCipedia transcript ID: OSTM1-AS1:2 
HGNC Gene Symbol: OSTM1-AS1    
HGNC Full Gene Name: OSTM1 antisense RNA 1
Ensembl Gene ID: ENSG00000225174
Ensembl Transcript ID: ENST00000441184
Location (hg38): chr6:108123633-108159392
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3334 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441184; ENST00000441184.1; OSTM1-AS1-001; OTTHUMT00000041713.2; NONHSAT114332
Alternative gene names: ENSG00000225174; RP3-429G5.3; ENSG00000225174.1; OSTM1-AS1; OTTHUMG00000015320.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.2821 non-coding 
CPAT coding probability 4.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
OSTM1-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NR2E1-1:2
3.1 lnc-NR2E1-1:2
4.0 OSTM1-AS1:2
4.1 OSTM1-AS1:2
5.0 OSTM1-AS1:2
5.1 OSTM1-AS1:2
5.2 OSTM1-AS1:2