Transcript: OSTM1-AS1:3

Basic information

LNCipedia transcript ID: OSTM1-AS1:3 
LNCipedia gene ID: OSTM1-AS1
Location (hg38): chr6:108123636-108158018
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1957 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00011185
Alternative gene names: XLOC_005417; linc-NR2E1-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.2821 non-coding 
CPAT coding probability 4.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
OSTM1-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NR2E1-1:3
3.1 lnc-NR2E1-1:3
4.0 OSTM1-AS1:3
4.1 OSTM1-AS1:3
5.0 OSTM1-AS1:3
5.1 OSTM1-AS1:3
5.2 OSTM1-AS1:3