Transcript: OTX2-AS1:1
Basic information
LNCipedia transcript ID: OTX2-AS1:1
HGNC Gene Symbol: OTX2-AS1
HGNC Full Gene Name:
OTX2 antisense RNA 1 (head to head)
Ensembl Gene ID:
ENSG00000248550
Ensembl Transcript ID:
ENST00000534909
RefSeq ID:
NR_029385
Location (hg38): chr14:56813183-56930833
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2428 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000534909; ENST00000534909.2; OTX2-AS1-001; OTTHUMT00000412893.1; NONHSAT037065; NR_029385.1
Alternative gene names: ENSG00000248550; RP11-1077A2.1; ENSG00000248550.3; OTX2-AS1; OTTHUMG00000171304.1; OTX2OS1
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| OTX2-AS1:1 | no | no | no | no |
Available literature
- He (2013), ANRIL/CDKN2B-AS shows two-stage clade-specific evolution and becomes conserved after transposon insertions in simians., BMC Evol. Biol.
- Alfano (2005), Natural antisense transcripts associated with genes involved in eye development., Hum. Mol. Genet.
LNCipedia transcript ID history
| LNCipedia version | LNCipedia transcript ID |
|---|---|
| 1.3 | lnc-AL391152.1-1:1 |
| 3.1 | lnc-C14orf101-4:1 |
| 4.0 | OTX2-AS1:1 |
| 4.1 | OTX2-AS1:1 |
| 5.0 | OTX2-AS1:1 |
| 5.1 | OTX2-AS1:1 |
| 5.2 | OTX2-AS1:1 |