Transcript: OTX2-AS1:2

Basic information

LNCipedia transcript ID: OTX2-AS1:2 
LNCipedia gene ID: OTX2-AS1
Location (hg38): chr14:56813183-56930832
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2427 bp
Exons: 4
Sources: long non-coding rna db - lncrnadb.com; Refseq - Dec 2014
Alternative transcript names: NR_029385
Alternative gene names: Otx2os1; OTX2-AS1; OTX2OS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.6621 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
OTX2-AS1:2 no no no no

Available literature

  1. He (2013), ANRIL/CDKN2B-AS shows two-stage clade-specific evolution and becomes conserved after transposon insertions in simians., BMC Evol. Biol.
  2. Alfano (2005), Natural antisense transcripts associated with genes involved in eye development., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C14orf101-4:5
4.0 OTX2-AS1:2
4.1 OTX2-AS1:2
5.0 OTX2-AS1:2
5.1 OTX2-AS1:2
5.2 OTX2-AS1:2