Transcript: OTX2-AS1:3

Basic information

LNCipedia transcript ID: OTX2-AS1:3 
HGNC Gene Symbol: OTX2-AS1    
HGNC Full Gene Name: OTX2 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000248550
Ensembl Transcript ID: ENST00000554428
Location (hg38): chr14:56813233-56919792
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 389 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554428; ENST00000554428.1; OTX2-AS1-004; OTTHUMT00000412894.1; NONHSAT037066
Alternative gene names: ENSG00000248550; RP11-1077A2.1; ENSG00000248550.3; OTX2-AS1; OTTHUMG00000171304.1; OTX2OS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -276.0039 non-coding 
CPAT coding probability 1.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
OTX2-AS1:3 no no no no

Available literature

  1. He (2013), ANRIL/CDKN2B-AS shows two-stage clade-specific evolution and becomes conserved after transposon insertions in simians., BMC Evol. Biol.
  2. Alfano (2005), Natural antisense transcripts associated with genes involved in eye development., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL391152.1-1:2
3.1 lnc-C14orf101-4:2
4.0 OTX2-AS1:3
4.1 OTX2-AS1:3
5.0 OTX2-AS1:3
5.1 OTX2-AS1:3
5.2 OTX2-AS1:3