Transcript: PACERR:2

Basic information

LNCipedia transcript ID: PACERR:2 
LNCipedia gene ID: PACERR
RefSeq ID: NR_125801
Location (hg38): chr1:186680654-186681446
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 793 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125801; NR_125801.1
Alternative gene names: PACER; PTGS2-AS1; PACERR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -149.9268 non-coding 
CPAT coding probability 3.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PACERR:2 no no no no

Available literature

  1. Krawczyk (2014), p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes., Elife


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLA2G4A-10:2
4.0 PACERR:2
4.1 PACERR:2
5.0 PACERR:2
5.1 PACERR:2
5.2 PACERR:2