Transcript: PART1:10

Basic information

LNCipedia transcript ID: PART1:10 
HGNC Gene Symbol: PART1    
HGNC Full Gene Name: prostate androgen-regulated transcript 1
Ensembl Gene ID: ENSG00000152931
Ensembl Transcript ID: ENST00000504876
Location (hg38): chr5:60488207-60526418
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5616 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504876.2
Alternative gene names: ENSG00000152931.7; PART1; DKFZP586D0823; NCRNA00206


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.5726 non-coding 
CPAT coding probability 1.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PART1:10 yes no no no

Available literature

  1. Webb (2015), RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles., BMC Genomics
  2. Zhang (2013), A long non-coding RNA signature in glioblastoma multiforme predicts survival., Neurobiol. Dis.
  3. Lin (2000), PART-1: a novel human prostate-specific, androgen-regulated gene that maps to chromosome 5q12., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC109486.1-1:10
4.0 PART1:10
4.1 PART1:10
5.0 PART1:10
5.1 PART1:10
5.2 PART1:10