Transcript: PART1:5

Basic information

LNCipedia transcript ID: PART1:5 
LNCipedia gene ID: PART1
RefSeq ID: NR_028508
Location (hg38): chr5:60487932-60491265
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2097 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_028508; NR_028508.1
Alternative gene names: DKFZP586D0823; NCRNA00206; PART1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.406 non-coding 
CPAT coding probability 4.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PART1:5 yes no no no

Available literature

  1. Webb (2015), RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles., BMC Genomics
  2. Zhang (2013), A long non-coding RNA signature in glioblastoma multiforme predicts survival., Neurobiol. Dis.
  3. Lin (2000), PART-1: a novel human prostate-specific, androgen-regulated gene that maps to chromosome 5q12., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC109486.1-1:9
4.0 PART1:5
4.1 PART1:5
5.0 PART1:5
5.1 PART1:5
5.2 PART1:5