Transcript: PART1:8

Basic information

LNCipedia transcript ID: PART1:8 
LNCipedia gene ID: PART1
Location (hg38): chr5:60488204-60489843
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 403 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00009975
Alternative gene names: XLOC_004399; linc-NDUFAF2-3; DKFZP586D0823; NCRNA00206


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -370.5137 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PART1:8 yes no no no

Available literature

  1. Webb (2015), RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles., BMC Genomics
  2. Zhang (2013), A long non-coding RNA signature in glioblastoma multiforme predicts survival., Neurobiol. Dis.
  3. Lin (2000), PART-1: a novel human prostate-specific, androgen-regulated gene that maps to chromosome 5q12., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC109486.1-1:3
3.1 lnc-AC109486.1-1:3
4.0 PART1:8
4.1 PART1:8
5.0 PART1:8
5.1 PART1:8
5.2 PART1:8