Transcript: PAXIP1-AS1:11

Basic information

LNCipedia transcript ID: PAXIP1-AS1:11 
LNCipedia gene ID: PAXIP1-AS1
Location (hg38): chr7:155003459-155005683
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2225 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1250:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -16.5369 non-coding 
CPAT coding probability 16.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAXIP1-AS1:11 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 PAXIP1-AS1:11
4.1 PAXIP1-AS1:11
5.0 PAXIP1-AS1:11
5.1 PAXIP1-AS1:11
5.2 PAXIP1-AS1:11