Transcript: PAXIP1-AS1:12

Basic information

LNCipedia transcript ID: PAXIP1-AS1:12 
LNCipedia gene ID: PAXIP1-AS1
Location (hg38): chr7:155003857-155005665
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1518 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013647; NONHSAT124339
Alternative gene names: XLOC_006301; linc-HTR5A-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.723 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAXIP1-AS1:12 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC093726.6.1-1:9
3.1 lnc-AC093726.6.1-1:9
4.0 PAXIP1-AS1:12
4.1 PAXIP1-AS1:12
5.0 PAXIP1-AS1:12
5.1 PAXIP1-AS1:12
5.2 PAXIP1-AS1:12