Transcript: PAXIP1-AS1:3

Basic information

LNCipedia transcript ID: PAXIP1-AS1:3 
LNCipedia gene ID: PAXIP1-AS1
Location (hg38): chr7:155003444-155015124
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 643 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013641; NONHSAT124331
Alternative gene names: XLOC_006301; linc-HTR5A-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.2046 non-coding 
CPAT coding probability 5.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAXIP1-AS1:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC093726.6.1-1:2
3.1 lnc-AC093726.6.1-1:2
4.0 PAXIP1-AS1:3
4.1 PAXIP1-AS1:3
5.0 PAXIP1-AS1:3
5.1 PAXIP1-AS1:3
5.2 PAXIP1-AS1:3