Transcript: PCAT4:1

Basic information

LNCipedia transcript ID: PCAT4:1 
HGNC Gene Symbol: PCAT4    
HGNC Full Gene Name: prostate cancer associated transcript 4
Ensembl Gene ID: ENSG00000251321
Ensembl Transcript ID: ENST00000504263
RefSeq ID: NR_026555
Location (hg38): chr4:79827471-79863247
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2091 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000504263.1; RP11-610O8.1-001; OTTHUMT00000365980.1; NONHSAT097121; NR_026555; NR_026555.1
Alternative gene names: ENSG00000251321.1; RP11-610O8.1; OTTHUMG00000161746.1; PCAT4; GDEP; PCAN1; PCA4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.5002 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT4:1 no no no no

Available literature

  1. Liu (2008), Characterization of two functional NKX3.1 binding sites upstream of the PCAN1 gene that are involved in the positive regulation of PCAN1 gene transcription., BMC Mol. Biol.
  2. Cross (2004), Expression and initial promoter characterization of PCAN1 in retinal tissue and prostate cell lines., Med. Oncol.
  3. Olsson (2001), GDEP, a new gene differentially expressed in normal prostate and prostate cancer., Prostate


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRDM8-1:1
4.0 PCAT4:1
4.1 PCAT4:1
5.0 PCAT4:1
5.1 PCAT4:1
5.2 PCAT4:1