Transcript: PCF11-AS1:11

Basic information

LNCipedia transcript ID: PCF11-AS1:11 
LNCipedia gene ID: PCF11-AS1
Ensembl Gene ID: ENSG00000247137
Ensembl Transcript ID: ENST00000530825
Location (hg38): chr11:83191063-83192816
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 375 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530825; ENST00000530825.1; RP11-727A23.5-007; OTTHUMT00000392557.1; NONHSAT023394; ENST00000530825.5
Alternative gene names: ENSG00000247137; RP11-727A23.5; ENSG00000247137.2; OTTHUMG00000167033.1; ENSG00000247137.4; ENSG00000247137.8; ENST00000602322.1; AP000873.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -157.7355 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCF11-AS1:11 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC90B-1:7
3.1 lnc-CCDC90B-2:7
4.0 PCF11-AS1:11
4.1 PCF11-AS1:11
5.0 PCF11-AS1:11
5.1 PCF11-AS1:11
5.2 PCF11-AS1:11