Transcript: PLCXD2-AS1:1

Basic information

LNCipedia transcript ID: PLCXD2-AS1:1 
HGNC Gene Symbol: PLCXD2-AS1    
HGNC Full Gene Name: PLCXD2 antisense RNA 1
Ensembl Gene ID: ENSG00000240766
Ensembl Transcript ID: ENST00000493131
Location (hg38): chr3:111676736-111677433
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 491 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000493131.1; PLCXD2-AS1-001; OTTHUMT00000354319.1
Alternative gene names: ENSG00000240766.1; PLCXD2-AS1; OTTHUMG00000159277.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -226.4718 non-coding 
CPAT coding probability 2.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PLCXD2-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZBED2-1:1
4.0 PLCXD2-AS1:1
4.1 PLCXD2-AS1:1
5.0 PLCXD2-AS1:1
5.1 PLCXD2-AS1:1
5.2 PLCXD2-AS1:1