Transcript: PROX1-AS1:26

Basic information

LNCipedia transcript ID: PROX1-AS1:26 
HGNC Gene Symbol: PROX1-AS1    
HGNC Full Gene Name: PROX1 antisense RNA 1
Ensembl Gene ID: ENSG00000230461
Ensembl Transcript ID: ENST00000626670
Location (hg38): chr1:213832591-213981328
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 759 bp
Exons: 7
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000626670.2
Alternative gene names: ENSG00000230461.8; PROX1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -46.2175 non-coding 
CPAT coding probability 3.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PROX1-AS1:26 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 PROX1-AS1:26
4.1 PROX1-AS1:26
5.0 PROX1-AS1:26
5.1 PROX1-AS1:26
5.2 PROX1-AS1:26