Transcript: PSORS1C3:2

Basic information

LNCipedia transcript ID: PSORS1C3:2 
LNCipedia gene ID: PSORS1C3
Location (hg38): chr6:31177663-31180504
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 295 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012143; NONHSAT108737
Alternative gene names: XLOC_005677; linc-POU5F1-1; NCRNA00196


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.6643 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PSORS1C3:2 no no no no

Available literature

  1. Zhang (2016), Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis., Arthritis Res. Ther.
  2. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCHCR1-1:2
3.1 lnc-CCHCR1-1:2
4.0 PSORS1C3:2
4.1 PSORS1C3:2
5.0 PSORS1C3:2
5.1 PSORS1C3:2
5.2 PSORS1C3:2