Transcript: PSORS1C3:3

Basic information

LNCipedia transcript ID: PSORS1C3:3 
HGNC Gene Symbol: PSORS1C3    
HGNC Full Gene Name: psoriasis susceptibility 1 candidate 3
Ensembl Gene ID: ENSG00000204528
Ensembl Transcript ID: ENST00000412143
RefSeq ID: NR_026816
Location (hg38): chr6:31173735-31177899
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 593 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011135; ENST00000412143.1; PSORS1C3-001; OTTHUMT00000156311.2; NONHSAT108735; NR_026816; NR_026816.1
Alternative gene names: XLOC_005677; linc-POU5F1-1; ENSG00000204528.3; PSORS1C3; OTTHUMG00000031054.4; NCRNA00196


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.5077 non-coding 
CPAT coding probability 4.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PSORS1C3:3 no no no no

Available literature

  1. Zhang (2016), Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis., Arthritis Res. Ther.
  2. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCHCR1-1:3
3.1 lnc-CCHCR1-1:3
4.0 PSORS1C3:3
4.1 PSORS1C3:3
5.0 PSORS1C3:3
5.1 PSORS1C3:3
5.2 PSORS1C3:3