Transcript: PTCSC3:2

Basic information

LNCipedia transcript ID: PTCSC3:2 
LNCipedia gene ID: PTCSC3
Location (hg38): chr14:36134716-36176755
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2250 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022710; NONHSAT036413
Alternative gene names: XLOC_010996; linc-RALGAPA1-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.7363 non-coding 
CPAT coding probability 18.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTCSC3:2 no no no no

Available literature

  1. Zheng (2016), BRAF-Activated Long Noncoding RNA Modulates Papillary Thyroid Carcinoma Cell Proliferation through Regulating Thyroid Stimulating Hormone Receptor., Cancer Res Treat
  2. Jendrzejewski (2015), PTCSC3 Is Involved in Papillary Thyroid Carcinoma Development by Modulating S100A4 Gene Expression., J. Clin. Endocrinol. Metab.
  3. Das (2014), lnCeDB: database of human long noncoding RNA acting as competing endogenous RNA., PLoS ONE
  4. Li (2014), Discovery of Protein-lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets., Front Bioeng Biotechnol
  5. Cheng (2013), Repressing the repressor: a lincRNA as a MicroRNA sponge in embryonic stem cell self-renewal., Dev. Cell
  6. Hangauer (2013), Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs., PLoS Genet.
  7. Kapusta (2013), Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs., PLoS Genet.
  8. Jendrzejewski (2012), The polymorphism rs944289 predisposes to papillary thyroid carcinoma through a large intergenic noncoding RNA gene of tumor suppressor type., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MBIP-2:2
3.1 lnc-MBIP-2:2
4.0 PTCSC3:2
4.1 PTCSC3:2
5.0 PTCSC3:2
5.1 PTCSC3:2
5.2 PTCSC3:2