Transcript: PTPRJ-AS1:1

Basic information

LNCipedia transcript ID: PTPRJ-AS1:1 
HGNC Gene Symbol: PTPRJ-AS1    
HGNC Full Gene Name: PTPRJ antisense RNA 1
Ensembl Gene ID: ENSG00000254879
Ensembl Transcript ID: ENST00000533964
Location (hg38): chr11:48014406-48015855
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 301 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533964.1; AC103828.1-001; OTTHUMT00000390946.1; NONHSAT021292
Alternative gene names: ENSG00000254879.1; AC103828.1; OTTHUMG00000166634.1; PTPRJ-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -193.6821 non-coding 
CPAT coding probability 2.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTPRJ-AS1:1 no no no no

Available literature

  1. Dave (2013), Regulated expression of PTPRJ/CD148 and an antisense long noncoding RNA in macrophages by proinflammatory stimuli., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NUP160-1:1
4.0 PTPRJ-AS1:1
4.1 PTPRJ-AS1:1
5.0 PTPRJ-AS1:1
5.1 PTPRJ-AS1:1
5.2 PTPRJ-AS1:1