Transcript: RPL34-AS1:4

Basic information

LNCipedia transcript ID: RPL34-AS1:4 
HGNC Gene Symbol: RPL34-AS1    
HGNC Full Gene Name: RPL34 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000234492
Ensembl Transcript ID: ENST00000506795
Location (hg38): chr4:108540168-108620429
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1136 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506795; ENST00000506795.1; RPL34-AS1-002; OTTHUMT00000363482.1; NONHSAT097757
Alternative gene names: ENSG00000234492; RP11-462C24.1; ENSG00000234492.3; RPL34-AS1; OTTHUMG00000161030.1; ENSG00000234492.4; FLJ37673


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.4865 non-coding 
CPAT coding probability 45.26% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RPL34-AS1:4 no no no no

Available literature

  1. Wang (2016), Long non-coding RNAs LOC285194, RP11-462C24.1 and Nbla12061 in serum provide a new approach for distinguishing patients with colorectal cancer from healthy controls., Oncotarget
  2. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  3. Zhao (2015), Long non-coding RNA Linc00152 is involved in cell cycle arrest, apoptosis, epithelial to mesenchymal transition, cell migration and invasion in gastric cancer., Cell Cycle
  4. Shi (2014), Low expression of novel lncRNA RP11-462C24.1 suggests a biomarker of poor prognosis in colorectal cancer., Med. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AGXT2L1-1:2
3.1 lnc-AGXT2L1-1:2
4.0 RPL34-AS1:4
4.1 RPL34-AS1:4
5.0 RPL34-AS1:4
5.1 RPL34-AS1:4
5.2 RPL34-AS1:4