Transcript: RUNDC3A-AS1:2

Basic information

LNCipedia transcript ID: RUNDC3A-AS1:2 
LNCipedia gene ID: RUNDC3A-AS1
Location (hg38): chr17:44307300-44315315
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 561 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000453562; ENST00000453562.1; AC003102.3-001; OTTHUMT00000255876.1; NONHSAT053934
Alternative gene names: ENSG00000225445; AC003102.3; ENSG00000225445.1; OTTHUMG00000132629.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 206.2433 coding 
CPAT coding probability 9.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RUNDC3A-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC25A39-1:1
3.1 lnc-SLC25A39-1:1
4.0 RUNDC3A-AS1:2
4.1 RUNDC3A-AS1:2
5.0 RUNDC3A-AS1:2
5.1 RUNDC3A-AS1:2
5.2 RUNDC3A-AS1:2