Transcript: SNHG17:12

Basic information

LNCipedia transcript ID: SNHG17:12 
HGNC Gene Symbol: SNHG17    
HGNC Full Gene Name: small nucleolar RNA host gene 17
Ensembl Gene ID: ENSG00000196756
Ensembl Transcript ID: ENST00000436764
Location (hg38): chr20:38420588-38435333
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 973 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436764; ENST00000436764.1; RP4-564F22.2-001; OTTHUMT00000079161.1; NONHSAT079655; ENST00000436764.5
Alternative gene names: ENSG00000196756; RP4-564F22.2; ENSG00000196756.5; OTTHUMG00000032442.1; ENSG00000196756.7; SNHG17; ENSG00000196756.11;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.6955 non-coding 
CPAT coding probability 9.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG17:12 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1755-3:3
3.1 lnc-KIAA1755-5:4
4.0 SNHG17:12
4.1 SNHG17:12
5.0 SNHG17:12
5.1 SNHG17:12
5.2 SNHG17:12