Transcript: SNHG17:16

Basic information

LNCipedia transcript ID: SNHG17:16 
LNCipedia gene ID: SNHG17
Location (hg38): chr20:38420592-38435319
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1073 bp
Exons: 8
Sources: NONCODE v4
Alternative transcript names: NONHSAT079657
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.7361 non-coding 
CPAT coding probability 9.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG17:16 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1755-5:16
4.0 SNHG17:16
4.1 SNHG17:16
5.0 SNHG17:16
5.1 SNHG17:16
5.2 SNHG17:16